Dissemination

CASPAN papers: Van Elburg, R. J., Bosman, L. W. J., Brussaard, A. B., and Van Ooyen, A. GABAA receptor plasticity provides input-output constancy of cellular firing behavior in visual neocortical microcircuits around eye opening, to be submitted. Van Elburg, R. A. J., and Van Ooyen, A. Dendritic size and branching structure influence neuronal burst firing in pyramidal cells. J. Neurosci., to be submitted. Koene, R.A., Tijms, B., Van Hees, P., Ramakers, G., Van Pelt, J., Van Ooyen, A. NETMORPH: A framework for the stochastic generation of large scale neuronal networks with realistic morphology. Neuroinformatics, submitted. Van Elburg, R. A. J., and Van Ooyen, A. (2008). Analysis of an event-based integrate-and-fire model. J. Math. Biol., submitted (now under revision). Cornelisse LN, van Elburg RAJ, Meredith RM, Yuste R, Mansvelder HD (2007). High Speed Two-Photon Imaging of Calcium Dynamics in Dendritic Spines: Consequences for Spine Calcium Kinetics and Buffer Capacity. PLoS ONE 2(10): e1073. doi:10.1371/journal.pone.0001073 Rigat, F., De Gunst, M., Van Pelt, J. (2006). Bayesian modelling and analysis of spatio-temporal neuronal networks. Bayesian Analysis 1: 733-764. Van Elburg, R., and Van Ooyen, A. (2004). A new measure for bursting. Neurocomputing 58-60: 497-502. Papers directly related to CASPAN: Butz, M., Teuchert-Noodt, G., Grafen, K., and Van Ooyen, A. (2008). Inverse relationship between adult hippocampal cell proliferation and synaptic rewiring in the dentate gyrus. Hippocampus, provisionally accepted upon revision. Poil, S.-S., Van Ooyen, A., and Linkenkaer-Hansen, K. (2008). Avalanche dynamics of human brain oscillations: relation to critical branching processes and temporal correlations. Human Brain Mapping, in press. Vajda, I. , Van Pelt, J., Wolters, P., Chiappalone, M., Martinoia, S., Van Someren, E., and Van Ooyen, A. (2008). Low-frequency stimulation induces stable transitions in stereotypical activity in cortical networks. Biophysical Journal (in press). Van Pelt, J., Vajda, I., Wolters, P.S., Ramakers, G., and Van Ooyen, A. (2008). Effect of low-frequency stimulation on spontaneous firing in cultured neuronal networks. Proceedings ICCN2007, Springer (in press). Van Pelt, J., and Uylings, H.B.M. (2007). Modeling neuronal growth and shape. In Modeling Biology - Structures, Behaviors, Evolution; Manfred Laubichler and Gerd B. Müller (eds). MIT Press, Cambridge, pp 195-215. LeFeber, J., Rutten, W.L.C., Stegenga, J., Wolters, P.S., Ramakers, G.J.A., and Van Pelt, J. (2007). Conditional firing probabilities in cultured neuronal networks: a stable underlying structure in widely varying spontaneous activity patterns. J. Neural Eng 4: 54-67. Linkenkaer-Hansen, K., Smit, D. J. A., Barkil, A., Van Beijsterveldt, T. E. M., Brussaard, A. B., Boomsma, D. I., Van Ooyen, A., and De Geus, E. J. C. (2007). Genetic contributions to long-range temporal correlations in ongoing oscillations. J. Neuroscience 27: 13882-13889. Krottje, J. K., and Van Ooyen, A. (2007). A mathematical framework for modelling axon guidance. Bulletin of Mathematical Biology 69: 3-31. Janulevicius, A., Van Pelt, J., and Van Ooyen, A. (2006). Compartment volume influences microtubule dynamic instability: a model study. Biophysical J. 90: 788-798. Steuber, V., Willshaw, D., and Van Ooyen, A. (2006). Generation of time delays: simplified models of intracellular signalling in cerebellar Purkinje cells. Network: Computation in Neural Systems 17: 173-191. Graham, B. P., and Van Ooyen, A. (2006). Mathematical modelling and numerical simulation of the morphological development of neurons. BMC Neuroscience 7 (Suppl 1): S9. Van Pelt, J., Van Galen, E., Wolters, P., Ramakers, G.J.A., Vajda, I. (2006) Effects of low-frequency stimulation on spontaneous firing dynamics in dissociated cortical cultures on multi-electrode arrays. Proceedings MEA Meeting 2006, BIOPRO edition vol.3, BIOPRO Baden-Wurttemberg Gmbh, Stuttgart, 2006, Germany, pp 19-21. Bosman, L., Lodder, J. C., Van Ooyen, A., and Brussaard, A. B. (2005). Role of synaptic inhibition in spatiotemporal patterning of cortical activity. In: Van Pelt, J., Kamermans, M., Levelt, C. N., Van Ooyen, A., Ramakers, G. J. A., Roelfsema, P. R. (eds.) Development, Dynamics and Pathology of Neuronal Networks: From Molecules to Functional Circuits, Progress in Brain Research 147, Elsevier, Amsterdam, pp. 201-204. Van Ooyen, A., Bosman, L., and Brussaard, A. (2004). Influence of the decay time of the GABAergic postsynaptic current on the spatial spread of network activity. Neurocomputing 58-60: 291-295. CASPAN abstracts / posters: Jaap van Pelt, Sander de Ridder, Frank Postma, Betty Tijms, Peter van Hees, Randal Koene, and Arjen van Ooyen. NETMORPH - A framework for the generation of large-scale neuronal networks with realistic morphology. CLS Dag 24 November 2008, Utrecht, the Netherlands. Koene, R.A., Van Pelt, J., Van Ooyen, A. . (2008) Stochastic generation of large scale neuronal networks with realistic morphology. ENP 2008 7th Dutch Endo-Neuro-Psycho Meeting, Doorwerth, 4-6 June 2008 - Abstract UAI: c567a96e0310170516. Koene, R.A., Van Pelt, J., Van Ooyen, A. (2008) Stochastic generation and analysis of large-scale neuronal networks with realistic morphology using NETMORPH. 6th FENS Forum of European Neuroscience, Geneva, Switzerland, 12-16 July 2008. Poil, S. S., Jansen, R., Brussaard, A. B., Van Ooyen, A., Linkenkaer-Hansen, K. (2008). Avalanche dynamics of ongoing oscillations in vitro, in vivo, and in computational models. 6th FENS Forum of European Neuroscience, Geneva, Switzerland, 12-16 July 2008. Koene, R. A., Van Pelt, J., and Van Ooyen, A. (2007). Stochastic neuronal morphogenesis and network development with NETMORPH. NWO Computational Life Sciences Meeting, Utrecht, The Netherlands, 4-6 October 2007. Van Hees, P., Tijms, B. M., Koene, R. A., Van Pelt, J., and Van Ooyen, A. (2007). Modeling neuronal morphology and synaptic connectivity using NETMORPH. 6th Dutch Endo-Neuro-Psycho Meeting, Doorwerth, The Netherlands, 5-8 June 2007, p. 178. Koene, R. A., Van Pelt, J., and Van Ooyen, A. (2007). Large scale high resolution network generation: Producing known validation sets for serial reconstruction methods that use histological images of neural tissue. International Conference on Complex Systems, Boston, MA, USA, 2007. Koene, R. A., Green, N., Ramakers, G., Van Pelt, J., and Van Ooyen, A. (2006). Scope and resolution, simulating large scale neuronal networks to study the effect of morphological detail on emergent large scale patterns of activity. NINDS Neural Interfaces Workshop, 37th Annual Neural Prosthesis Workshop, Bethesda, Maryland, USA, 2006. Van Pelt, J., Koene, R., Van Ooyen, A., Vajda, I., Uylings, H., and Ramakers, G. (2006). Modeling the geometry of neurons and neuronal networks. Modeling the Brain's Labyrinth, Crete Anniversary Meeting of the EU course in Computational Neuroscience, Fodele Beach, Crete, 23-27 September 2006. Ridder, M. C., Van Elburg, R., Van Ooyen, A., Brussaard, A., and Burnashev, N. (2006). Effect of IPSC characteristics on neuronal microcircuit activity. 5th Dutch Endo-Neuro-Psycho Meeting, Doorwerth, The Netherlands, 6-9 June 2006, p. 212. Koene, R. A., Green, N., Ramakers, G., Van Pelt, J., and Van Ooyen, A. (2006). A framework for the generation of large scale neuronal networks with realistic morphology by applying stochastic growth models. 5th Dutch Endo-Neuro-Psycho Meeting, Doorwerth, The Netherlands, 6-9 June 2006, p. 209. Jansen, R., Linkenkaer-Hansen, K., Stoof, C., Lodder, H., Brussaard, A., De Gunst, M., and Van Ooyen, A. (2006). Principal component analysis of spatiotemporal activity patterns in mouse hippocampus. 5th Dutch Endo-Neuro-Psycho Meeting, Doorwerth, The Netherlands, 6-9 June 2006, p. 177. Van Elburg, R. A. J., and Van Ooyen, A. (2006). Dendritic morphology influences burst firing. 15th Annual Computational Neuroscience Meeting, Edinburgh, UK, 16-20 July 2006, p. 48. Van Elburg, R. A. J., Van Aerde, K., Reinacher, U. D., Mansvelder, H., Brussaard, A. B., and Van Ooyen, A. (2006). Role of inhibition in neuronal network oscillations. 5th Dutch Endo-Neuro-Psycho Meeting, Doorwerth, The Netherlands, 6-9 June 2006, p. 93. Van Elburg, R. A. J., Burnashev, N., Couey, J. J., and Van Ooyen, A. (2005). Transient microcircuit dynamics for the neocortex. 4th Dutch Endo-Neuro-Psycho Meeting, Doorwerth, The Netherlands, 31 May - 3 June 2005, p. 238. Fonds, D., Van Elburg, R., and Van Ooyen, A. (2003). Influence of dendritic topology on firing patterns in model neurons activated by synaptic stimulation of the dendritic tree. 12th Annual Computational Neuroscience Meeting, Alicante, Spain, 5-9 July 2003, p. 77. Abstracts directly related to CASPAN: Van Pelt, J., Van Ooyen, A. (2007). Neuroinformatics in the Netherlands. 1st International Conference on Cognitive Neurodynamics (ICCN2007), November 17-21, 2007, Shanghai, China. Van Pelt, J., Vajda, I., Wolters, P., Ramakers, G., Van Ooyen, A. (2007). Dynamics, plasticity and stability in cultured neuronal networks. The Eighteenth National Congress of the Bulgarian Anatomical Society, June 1-3, 2007, Stara Zagora, Bulgaria. Van Pelt, J., Vajda, I., Wolters, P., Corner, M.A., Ramakers, G. (2006) Dynamics, plasticity and stability in cultured neuronal networks. 4th European School of Neuro-IT and Neuroengineering, 13-17 June 13-17, 2006, Genova, Italy. Van Ooyen, A., Heistek, T., Lodder, J.C., Bosman, L., Brussaard, A.B. (2004). On the idea that the kinetics of GABAA receptor mediated synaptic currents control long range synchrony of 40 Hz oscillations in neocortex. 3rd Dutch Endo-Neuro-Psycho Meeting, June 2004, Doorwerth. Invited Lectures: Frank Postma, Peter van Hees, Betty Tijms, Sander de Ridder, Randal Koene, Jaap van Pelt, and Arjen van Ooyen. Modeling neuronal morphology and synaptic connectivity using NETMORPH. 1st INCF Congress of Neuroinformatics 2008, September 7-9, 2008, Stockholm, Sweden. Van Ooyen, A., and Van Elburg, R. A. J. Influence of dendritic morphology on pyramidal cell burst firing. Lecture to be given at School of Computer Science, Science and Technology Research Institute, University of Hertfordshire, UK, 2008. Van Ooyen, A., and Van Elburg, R. A. J. Dendritic size and branching structure influence neuronal burst firing. Lecture at Max-Planck Institute for Dynamics and Self-organization, Bernstein Center for Computational Neuroscience, Göttingen, Germany, 30 October 2007. Van Pelt, J. Dynamics, plasticity and stability in cultured neuronal networks. UKE Hamburg, 12 October 2007. Vajda, I., Poil, S-S., Linkenkaer-Hansen, K., Van Ooyen, A. Critical dynamics in developing cortical networks, 6th Dutch Endo-Neuro-Psycho Meeting (6-8 June 2007), Doorwerth, the Netherlands Linkenkaer-Hansen, K., Poil S-S., Van Ooyen, A. Synaptic connectivity underlying long-range temporal correlations, 6th Dutch Endo-Neuro-Psycho Meeting (6-8 June 2007), Doorwerth, the Netherlands Koene, R.A. (2007). Computational Modeling: Neural Morphogenesis and Network Development. Lecture given at the NEURoVERS-it Workshop on Computational Modeling. Amsterdam, Netherlands. Van Elburg, R. A. J., Van Aerde, K., Reinacher, U. D., Mansvelder, H., Brussaard, A. B., and Van Ooyen, A. Role of inhibition in neuronal network oscillations. lecture at Session on Role of Excitation and Inhibition in Neuronal Network Dynamics: Model Studies, 5th Dutch Endo-Neuro-Psycho Meeting, Doorwerth, The Netherlands, 6-9 June 2006. Van Elburg, R. A. J., and Van Ooyen, A. The impact of dendritic morphology on neuronal firing patterns. Lecture at Workshop on Modelling Structural Plasticity and Neural Development, 15th Annual Computational Neuroscience Meeting, Edinburgh, UK, 16-20 July 2006. Van Ooyen, A., Van Pelt, J., De Gunst, M., Brussaard, A. B., Van Elburg, R. A. J., Koene, R., and Jansen, R. Computational analysis of spatiotemporal patterns of activity in neuronal networks. Lecture at Workshop Neuroinformatics: Challenges for the Netherlands, ZonMW, NWO, The Hague, The Netherlands, 26 November 2004. Van Ooyen, A., and Van Elburg, R. A. J. Effects of dendritic morphology on firing patterns. Lecture at Workshop on Assessing New Structure-Function Relationships by Computational Neuroscience Models, at the Computational Neuroscience Meeting, Alicante, Spain , July 2003.